PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027117046.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 578aa MW: 61822.9 Da PI: 6.2843

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027117046.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.7e-09	389	436	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_027117046.1 389 AHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 436 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MERENLQMPY GSGIGGFHNN ELNCSSSEVQ FQNCFFNPSW DNSLDQNDPF ESALSSMVSS 60 PAASNAAGGG AGGGGGVPGS SNGGENVVLR ELIGRLGSIC NSGEISPQSY MGGGNNSTNT 120 SCYSTPLNSP PKLNLSMMDH QIRGNLPIPG HHLPSHSSFT PFPTDPGFAE RAARFSCFAN 180 KSLGGLNSQI GPLHDSELQN RLVQKLDSGK LSRVSSNQSL KVNSGSQLDV QDSKDGSLQD 240 GISASDRKFS KLSGSSTPEN TEFGDSRENS SVSEQITTGE TGNNGQNDAN SRKRKSIARG 300 KAKEPPSSSN SAKDANGASD SNESNAKRSK SGEENADEKD ATKAMADTNG TDKAAGDGNQ 360 KQNKENSKPP EAPKDYIHVR ARRGQATDAH SLAERVRREK ISERMKLLQD LVPGCNKVTG 420 KAVMLDEIIN YVQSLQRQVE FLSMKLATIN PRMEFNAEAL VSKDVLHSRG SLPHNMYSSE 480 ASAAGFPYPM QSQNGTNLPS AAIPNGQDVP FSMNHLSAAI SRNQGIHLPP LDNFGEAASQ 540 IPSFWEDDLH TVVQMGFGQN QTQNFHGIMP TAQMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MERENLQMPY GSGIGGFHNN ELNCSSSEVQ FQNCFFNPSW DNSLDQNDPF ESALSSMVSS  60
PAASNAAGGG AGGGGGVPGS SNGGENVVLR ELIGRLGSIC NSGEISPQSY MGGGNNSTNT  120
SCYSTPLNSP PKLNLSMMDH QIRGNLPIPG HHLPSHSSFT PFPTDPGFAE RAARFSCFAN  180
KSLGGLNSQI GPLHDSELQN RLVQKLDSGK LSRVSSNQSL KVNSGSQLDV QDSKDGSLQD  240
GISASDRKFS KLSGSSTPEN TEFGDSRENS SVSEQITTGE TGNNGQNDAN SRKRKSIARG  300
KAKEPPSSSN SAKDANGASD SNESNAKRSK SGEENADEKD ATKAMADTNG TDKAAGDGNQ  360
KQNKENSKPP EAPKDYIHVR ARRGQATDAH SLAERVRREK ISERMKLLQD LVPGCNKVTG  420
KAVMLDEIIN YVQSLQRQVE FLSMKLATIN PRMEFNAEAL VSKDVLHSRG SLPHNMYSSE  480
ASAAGFPYPM QSQNGTNLPS AAIPNGQDVP FSMNHLSAAI SRNQGIHLPP LDNFGEAASQ  540
IPSFWEDDLH TVVQMGFGQN QTQNFHGIMP TAQMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	291	296	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	9e-78	bHLH family protein