PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027116404.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 304aa    MW: 33042.3 Da    PI: 5.0412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027116404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10153197554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  XP_027116404.1 153 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 197
                     99***********************8.....6****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MATNPPQEGY PTDDFLEQIL QLPSYSGLPV NDVGSTSDTA SLNSAVSQLS SVAGGLHHHQ  60
QLFPLGLSLD NGRDDVTDTG AFGVKADRGE AVNMGSLYPG FEQMQPHGMR HAAPHVQQAF  120
QGQPTPSTAV TVPHPPAIRP RVRARRGQAT DPHSIAERLR RERISERIKA LQELVPSCNK  180
TDRAAMLDEI LDYVKFLRLQ VKVLSMSRLG GAGAVAQLVA DIPLQTVEGD TGENISNQQV  240
WEKWSNEETE REVAKLMEED VGAAMQYLQS KALCIMPISL AALIYPTLQS EEPALVKPEP  300
PAPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.27e-60bHLH family protein