PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027116164.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 768aa    MW: 87702 Da    PI: 7.7739
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027116164.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.48.8e-2252126189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     +fYn YA++vGF++r+ + ++s+ +g++++r+fvCskeg++++              +rtgC a ++v+k ++gkw+++++++eHnHel
  XP_027116164.1  52 EFYNLYATQVGFRIRIGQLYRSRVDGSVISRRFVCSKEGFQTN--------------SRTGCPAFIRVQKADSGKWVLANINKEHNHEL 126
                     6***************************************987..............589****************************9 PP
2FAR1644.3e-20201276190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY+++A ++GF+vr+ +  +sk++g+it+r+fvCskeg++++              +r+gC a ++++++++g+w+v++l++eHnHe+ 
  XP_027116164.1 201 QFYCTFAASTGFRVRIGQLFRSKHDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQETGRWVVDRLQKEHNHEFD 276
                     6**************************************9998..............4899**************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    
MSREELGNAI TVRGKPIALM VVKANGHRDD EGESKLEPHV GLEFDSAEDA QEFYNLYATQ  60
VGFRIRIGQL YRSRVDGSVI SRRFVCSKEG FQTNSRTGCP AFIRVQKADS GKWVLANINK  120
EHNHELELPG EICPSRIQRK SLPNPRTTAV ISTRTGIRSH EEEGPSGVVD AKRLKHDEFR  180
GEPADEPYKG LEFTSANEAY QFYCTFAAST GFRVRIGQLF RSKHDGSITS RRFVCSKEGH  240
QHPSRVGCGA FMRIQRQETG RWVVDRLQKE HNHEFDTATD ASQRTTSVTK GFREEVISGL  300
ENLDLVETNG GLSLVKRGRE SNIGSDWYNV LLEYFQSRQA EDTGFFYAVE IDNGKAMSIF  360
WADARSRFSC TQFGDAIVFD TGYRRGSYSM PFASFVGVNH HRQPVLLGCA LIADESEESF  420
TWVFQAWLRA MSGRCPVSII ADQDKAITYS IANIFPGTHH RFSSWQMLAK EQENLGALLS  480
LNSEFKYEFE ACISQSQTAS EFDSAWNVLI NNYNLKESTW LKEMYRMRKS WVPLYIKGTF  540
FAGIPVDGSI KSYFGTVLTA HTPLNEFVIR YEKAVEQRRE DERKEDFNSF NLQAVLHTKD  600
PIEEQCRRLY TIIMFKVFQK ELLECYSYAG IKMNVEGAIS RYIVQKCGNG DERNTVAFNA  660
SNLNISCSCK LFEFEGVLCR HALKVFQIMN IRELPSRYVL HRWTKNAKYG ILRDIDSGGG  720
SQDLKALMLW SLREEARNYI DAGAASLERY KLAFEIMQEG RRNLCWQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1 family protein