PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027115636.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 320aa    MW: 35852.4 Da    PI: 8.5875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027115636.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000252132521155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rR +++ +++  L++l+ +      +K + a++L +A+ +Ik Lq
  XP_027115636.1 213 RRSQKLADKITSLQKLVSPY-----GKTDTASVLHEATVFIKVLQ 252
                     7999**************99.....9****************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MLPESRAQIQ ASEAISSASM RYISENLQFS RMKNTIFPQA SSQLNGYGSN ESVSDIPLQI  60
DSKLHTYDSN LYMDSTLHNQ HGVFTICSQS PTINYQSGPS PLMTIKSLDC PPLGANHFGT  120
KATYDSNIVK QQQLSHVEGI PGQPNEIGTK RIARKRPIEN ADMTSRKSPE TIAGNRPPSN  180
TEWTTNKKMA VCFQDHQVPE EIKEVLKDRV PVRRSQKLAD KITSLQKLVS PYGKTDTASV  240
LHEATVFIKV LQDQIENTFN RVRSTSMDHE YSQSKITGES QFDLRSMGFC LVPVSLTRNL  300
IREDAFNPYS TANTSLHRIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.13e-18bHLH family protein