PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115565.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 271aa MW: 30433.9 Da PI: 5.8109

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.7	3.5e-26	160	209	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++++++kyF+ pi++AAkeL+v+lTvLK++CR+++I+RWPhRkiksl XP_027115565.1 160 SALEVDEIQKYFDVPITKAAKELKVGLTVLKKRCRELNIRRWPHRKIKSL 209 67899*******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MNPPALSVVY QLENLLASDG SLYFEEQPPS GAWEQSYLAF PESLGQCPSG ICNCKEPFHA 60 WKWKNNSIPC LEMEFKDFED ICGDFGWHSP PDVKEPFFEG DVNVVDAKPL NAAGEIRDQA 120 LLENGETVFA EASGGNAVCS RSSEPLVSDD GLVSGRYKSS ALEVDEIQKY FDVPITKAAK 180 ELKVGLTVLK KRCRELNIRR WPHRKIKSLK SLIDSAKELG LTSEIEMLEE HKRMLKVLPE 240 MELTERTKKL RQACFKANYK KRRAMAAAAM A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	9e-39	Nin-like family protein