PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115526.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 595aa MW: 64335.4 Da PI: 5.8265

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115526.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.8e-13	396	441	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YIk+L XP_027115526.1 396 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVAYIKEL 441 799*********************6.....4**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence
MDELIVSSPS SSSMVSSLPQ ESRPIITTTA SSSLQLNLQY ILQTQSDCWA YAIFWQSSND 60 QSGRVVLAWG DGYFQGTKVV DDAPQNNNGN DPNKYNTTAT TGCGSGSQSE RKKVMKGIQA 120 LLGETPADGQ NDDGSVDCDV TDAEWFYVMS LAQSFFADDG APGKAFSSGN LVWLTGGQQL 180 QFYNCQRARE AQIHGIETLV CIPTAGGVLE LGSNALIQDI NWGLVQQANS LFGPAADVGV 240 GVADAAAAAT TRLLLTTKQQ EEAPESVDDE MLEGAISFAD FGLVMGGIPL HNSSNQEEEE 300 EDAATAGAES KKDHHRYHHH HYQEAKKAKK KGEHDDNHGI GRRGTSQVSS FLESSDSDCV 360 VVVETTTRSH QVERKGGVGG KKRGRKAGTG RETPLNHVEA ERQRREKLNH RFYALRSVVP 420 NVSRMDKASL LSDAVAYIKE LKGKVDELES QRKRIEGNKK SVKIEVADSN GNTTDNHSTT 480 TASSSVPVDQ RITIPKSKKS CSGGGGMRSN VQVEVKMVGT DAMVRVQSDS SGYPTARLMD 540 AIRDLELRVH HASMSHVNDL MLQDVVIRVP PNGAWASEEG LKAALLGRFL GTDDH

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence

MDELIVSSPS SSSMVSSLPQ ESRPIITTTA SSSLQLNLQY ILQTQSDCWA YAIFWQSSND  60
QSGRVVLAWG DGYFQGTKVV DDAPQNNNGN DPNKYNTTAT TGCGSGSQSE RKKVMKGIQA  120
LLGETPADGQ NDDGSVDCDV TDAEWFYVMS LAQSFFADDG APGKAFSSGN LVWLTGGQQL  180
QFYNCQRARE AQIHGIETLV CIPTAGGVLE LGSNALIQDI NWGLVQQANS LFGPAADVGV  240
GVADAAAAAT TRLLLTTKQQ EEAPESVDDE MLEGAISFAD FGLVMGGIPL HNSSNQEEEE  300
EDAATAGAES KKDHHRYHHH HYQEAKKAKK KGEHDDNHGI GRRGTSQVSS FLESSDSDCV  360
VVVETTTRSH QVERKGGVGG KKRGRKAGTG RETPLNHVEA ERQRREKLNH RFYALRSVVP  420
NVSRMDKASL LSDAVAYIKE LKGKVDELES QRKRIEGNKK SVKIEVADSN GNTTDNHSTT  480
TASSSVPVDQ RITIPKSKKS CSGGGGMRSN VQVEVKMVGT DAMVRVQSDS SGYPTARLMD  540
AIRDLELRVH HASMSHVNDL MLQDVVIRVP PNGAWASEEG LKAALLGRFL GTDDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	3e-48	bHLH family protein