PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027115042.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 410aa MW: 43735.6 Da PI: 10.6657

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027115042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.3	1.1e-37	93	200	2	103
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ ++ s a++++s+ XP_027115042.1 93 PPKRTSTKDRHTKVEGRGRRIRMPATCAARVFQLTKELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsvngtLKVPTTSPAAADNSNtvk 187 689*************************************************************7777733322221111111111111111111 PP TCP 89 ........kaaksaakskksqks 103 s ++ XP_027115042.1 188 rkrkrpsnY----------SADQ 200 111111111..........1111 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MGSAQKLELH GDQSRNGSNM PSLNNPWPRP PSTAVQPLRM PPAPPMAIPL ISLKEEPDDH 60 GEDKPPIPMA RSSQPLPMPT SLQMRQPVAP PTPPKRTSTK DRHTKVEGRG RRIRMPATCA 120 ARVFQLTKEL GHKSDGETIR WLLEHAEPAI IAATGTGTVP AIAMSVNGTL KVPTTSPAAA 180 DNSNTVKRKR KRPSNYSADQ HVNMPTNTDD NVATSSGNTS TSSTPTMSTF SSNNPSILAP 240 LMAIQPSTST TNAFPALVQN PAILQVPLVA AIPLVTNISP TFFILPPPQV PSSSSTNVPS 300 HVAANQPQIL AIPPNVNVTP FINVSARPIS AFIASSSTTP SDANALNIQQ LPRFLNVVGG 360 PTTMENLRVN SSATLLPSSS STSSDKSPST RTQVLREFSL EIHDKHEQQN

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MGSAQKLELH GDQSRNGSNM PSLNNPWPRP PSTAVQPLRM PPAPPMAIPL ISLKEEPDDH  60
GEDKPPIPMA RSSQPLPMPT SLQMRQPVAP PTPPKRTSTK DRHTKVEGRG RRIRMPATCA  120
ARVFQLTKEL GHKSDGETIR WLLEHAEPAI IAATGTGTVP AIAMSVNGTL KVPTTSPAAA  180
DNSNTVKRKR KRPSNYSADQ HVNMPTNTDD NVATSSGNTS TSSTPTMSTF SSNNPSILAP  240
LMAIQPSTST TNAFPALVQN PAILQVPLVA AIPLVTNISP TFFILPPPQV PSSSSTNVPS  300
HVAANQPQIL AIPPNVNVTP FINVSARPIS AFIASSSTTP SDANALNIQQ LPRFLNVVGG  360
PTTMENLRVN SSATLLPSSS STSSDKSPST RTQVLREFSL EIHDKHEQQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	193	VKRKRKRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-56	TCP family protein