PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027113641.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 745aa MW: 81182.1 Da PI: 10.1975

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027113641.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.9	1.5e-10	27	57	4	35
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgR 35 W+t+E++ll+ avk++G ++W+t+ar+++ +R XP_027113641.1 27 WSTWEELLLASAVKRHGLKDWDTVARELQ-NR 57 *****************************.76 PP

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence
MYYAYAIWVK ENIMSNAADV DTKELIWSTW EELLLASAVK RHGLKDWDTV ARELQNRHRH 60 RSSSSLPPTL FTAQICKNKF KHLRRRFTNN HRSASNNTAV TAGAGGVGGG GGESENNELP 120 REAQSDDDDE NDGLGGGGGG GGGGEGDCFP WLEELRKLRV AELKQEVHRY DLSIRSLQMK 180 VKTMEEEREK SLREDDDQHD DVKKPDLDEE VKQERSENDK NDGKDPPEMV AGKFLSGDND 240 ENMSYNESNS TESKRAGLKV EPKNEPAEAE PESESKPVGE EVSCNDSSAS QERGKGGGDS 300 RELRDSVGED ESKEGTKESS DVQSSASLLT RKRRRRGVDG GGGGGGDGVA VLSPATAPIK 360 REGGVGGAVK SEPSAFGFLD KIRSHKHGSV FERRLESQKT EKYKSTIRRH VDLEIVQARI 420 DDGSYTSCFL KFYKDLFLLF TNAIVFFPKS SPEALAAQEL RQLVLKELKN ASSGPSPQPS 480 LPAKPKPKPE VERSDSLLAK HKSTNPIFFS RKRSSISAKA SSSSANNAEK QRTNEKAVIN 540 SKTLIKSPLS TSTNDDEDSS KLKLKEKPVT GARSMRRSSK GRPNVSKPEP TPNSSNNKSS 600 SSQQPGSKDK GDKAEAAKGD KKKSEAIAST KKSGAADFLK RMKKNSPTKG TLVEALKSSR 660 ENNSNKGGRK DQPKKKVDER KDGPARRSGG GGGGRKHVKE ESSPLKKNAG RPPKKGKDVV 720 VTGGKRGREG GEGEGSSKRP KKRSR

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence

MYYAYAIWVK ENIMSNAADV DTKELIWSTW EELLLASAVK RHGLKDWDTV ARELQNRHRH  60
RSSSSLPPTL FTAQICKNKF KHLRRRFTNN HRSASNNTAV TAGAGGVGGG GGESENNELP  120
REAQSDDDDE NDGLGGGGGG GGGGEGDCFP WLEELRKLRV AELKQEVHRY DLSIRSLQMK  180
VKTMEEEREK SLREDDDQHD DVKKPDLDEE VKQERSENDK NDGKDPPEMV AGKFLSGDND  240
ENMSYNESNS TESKRAGLKV EPKNEPAEAE PESESKPVGE EVSCNDSSAS QERGKGGGDS  300
RELRDSVGED ESKEGTKESS DVQSSASLLT RKRRRRGVDG GGGGGGDGVA VLSPATAPIK  360
REGGVGGAVK SEPSAFGFLD KIRSHKHGSV FERRLESQKT EKYKSTIRRH VDLEIVQARI  420
DDGSYTSCFL KFYKDLFLLF TNAIVFFPKS SPEALAAQEL RQLVLKELKN ASSGPSPQPS  480
LPAKPKPKPE VERSDSLLAK HKSTNPIFFS RKRSSISAKA SSSSANNAEK QRTNEKAVIN  540
SKTLIKSPLS TSTNDDEDSS KLKLKEKPVT GARSMRRSSK GRPNVSKPEP TPNSSNNKSS  600
SSQQPGSKDK GDKAEAAKGD KKKSEAIAST KKSGAADFLK RMKKNSPTKG TLVEALKSSR  660
ENNSNKGGRK DQPKKKVDER KDGPARRSGG GGGGRKHVKE ESSPLKKNAG RPPKKGKDVV  720
VTGGKRGREG GEGEGSSKRP KKRSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	335	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	8e-42	MYB_related family protein