PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027113300.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 658aa MW: 78159.5 Da PI: 8.5984

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027113300.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.5	5.4e-09	137	164	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ XP_027113300.1 137 WKVAICGEYMKSKlkTCSRGTACNFIHC 164 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence
MVTKSCFNFS ITSCPALPYQ QQLCDLFLLL IFLFIFLGFS YVYAMNPFLY FFFFGQYTEE 60 EVERSYEEFY EDVHTEFLKF GEIVNFKVCR NGSYHLRGNV YVHYRELDSA VLARRFINGR 120 YFAGKQVNCE FVGVTRWKVA ICGEYMKSKL KTCSRGTACN FIHCFRNPGG DYEWADWEKP 180 PPKYWVKRMA ALFGYSHESG YDKWVEQETK GQRRNSSKSL IADEERYRSR RSLSREIKSS 240 NSSPRDNYKE DKFRRSKYSK RYRSDDTKRL EVPDEREYEE ERQSRSHQRG KRGQYEREFD 300 RAWLDEEKDA DGYYYSTRNT RESSRSPFRR RSQSHDCREI DKRKIPEKIS RKNHALSGTA 360 NDSDCNKEAS AYTDSGRDFS HENKDCISSR DLLYRRGASD SDSAGDWSDW IIESRRVQTR 420 KSSARVDEAA GFSSDLQESG KSLHDKYDEN GSEHAKPNLQ RGWRRTSSCK RKTRGDDYSD 480 EDEDSDTRGR REIDKDDTRE HHRHNHSSRK TRKADYADYA DENIDERGHL ETEKVDSREH 540 HKHNRSGRKT SKADYADKHD EDIDKRGCWE PEMVDAREYH KHNHSSRKTR KCDYAGEHHE 600 DIDKGGHWEP EKLDTREHHE HRRKSHGRSG SHDQNVDKHS RKSRSSNQKR KSYSRERD

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence

MVTKSCFNFS ITSCPALPYQ QQLCDLFLLL IFLFIFLGFS YVYAMNPFLY FFFFGQYTEE  60
EVERSYEEFY EDVHTEFLKF GEIVNFKVCR NGSYHLRGNV YVHYRELDSA VLARRFINGR  120
YFAGKQVNCE FVGVTRWKVA ICGEYMKSKL KTCSRGTACN FIHCFRNPGG DYEWADWEKP  180
PPKYWVKRMA ALFGYSHESG YDKWVEQETK GQRRNSSKSL IADEERYRSR RSLSREIKSS  240
NSSPRDNYKE DKFRRSKYSK RYRSDDTKRL EVPDEREYEE ERQSRSHQRG KRGQYEREFD  300
RAWLDEEKDA DGYYYSTRNT RESSRSPFRR RSQSHDCREI DKRKIPEKIS RKNHALSGTA  360
NDSDCNKEAS AYTDSGRDFS HENKDCISSR DLLYRRGASD SDSAGDWSDW IIESRRVQTR  420
KSSARVDEAA GFSSDLQESG KSLHDKYDEN GSEHAKPNLQ RGWRRTSSCK RKTRGDDYSD  480
EDEDSDTRGR REIDKDDTRE HHRHNHSSRK TRKADYADYA DENIDERGHL ETEKVDSREH  540
HKHNRSGRKT SKADYADKHD EDIDKRGCWE PEMVDAREYH KHNHSSRKTR KCDYAGEHHE  600
DIDKGGHWEP EKLDTREHHE HRRKSHGRSG SHDQNVDKHS RKSRSSNQKR KSYSRERD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-74	C3H family protein