PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027113007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | YABBY | ||||||||
Protein Properties | Length: 212aa MW: 23444.8 Da PI: 7.8538 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 240.1 | 4.7e-74 | 18 | 176 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvs 97 +eq+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsv +++ ll++ +hl++s+ + lleel+++ nl n+ + +++ XP_027113007.1 18 PPTEQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSV--NMRGLLLPSANHLGHSFFSPqnLLEELRNTPPNLLINQPNPNESL---- 106 5689***************************************5..567789**********97654588888888888877766554432.... PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +e+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl XP_027113007.1 107 ---MPVRGVDELPKPPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 176 ...45567889***999******************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MSSSSAFATP DHHHLAAPPT EQLCYVHCNF CDTVLAVSVP CTSLFKTVTV RCGHCTNLLS 60 VNMRGLLLPS ANHLGHSFFS PQNLLEELRN TPPNLLINQP NPNESLMPVR GVDELPKPPV 120 ANRPPEKRQR VPSAYNRFIK DEIQRIKAGN PDISHREAFS AAAKNWAHFP HIHFGLMPDQ 180 PVKKSNVCQQ EGEDVLMKDG FLAPANVGVS PY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 3e-92 | YABBY family protein |