PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112970.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 328aa MW: 35998.3 Da PI: 8.5769

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.9	2.2e-41	172	249	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v++sgl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ XP_027112970.1 172 RCQAEGCNADLTNAKHYHRRHKVCEFHSKAATVIASGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQ 249 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MLDYEWGNPS AVMFTGDDST QDADQNRQLF DPYGTQNFGE ATAALVHQNV HYSAAAHHQH 60 TGNPFHHPHD PQGQSSNAHF SSLFDPRAAY GASSYNPHHQ ASMLSLEPAG STGFMVIPKS 120 EPVVGGADFT AAGRIGLNLG GRTYFSSSED DFVSRLYRRS RVVEPGSVNS PRCQAEGCNA 180 DLTNAKHYHR RHKVCEFHSK AATVIASGLT QRFCQQCSRF HLLSEFDNGK RSCRKRLADH 240 NRRRRKSQQQ QQQQQPNQEH CNTNSKKSPN DNTRSPPDSG AHSSSVTVAV SPPRISLDCF 300 RQRASYQGAG AAATNSSAST SSLFFSDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	5e-83	SBP family protein