PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112632.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 399aa MW: 44083.1 Da PI: 4.6074

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112632.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.6e-10	325	365	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq XP_027112632.1 325 RKRREKINERLRILQKLIPNG-----TKVDISTMLEEAVQYVKFLQ 365 9****************97.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MESFGAMGCG DWSSFNAIYS STTEEADFMV RLLGNISLPN DVPNSSNVKF SSTYWPASES 60 DVNKAVVQED SSINSSDDTS VDADVCYSFS QGSSFSGEGS SILCPLSQIY FCNSNSIISQ 120 PIVTRNDSSV CADYAMMECK NKMDSCDHEI IRMNNILMEE GRDFLNQDVS SDCSMESGEN 180 DMPEAFSRGM ILQQGKDQHE INSLASEKSL EDESDNLLES SKKRPSTPLD VHKNKRMINA 240 KTNHQKLHPY DSKIAEGGHP MLCLQSSSSY LSEDDSNVFH ESNAGVLPIP ASCSDSKGAI 300 TAFNLNGKTR ASRGSATDHQ SLYARKRREK INERLRILQK LIPNGTKVDI STMLEEAVQY 360 VKFLQLQIKL LSSDDLWMYA PIAYNGKNLG LDMDATLKS

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MESFGAMGCG DWSSFNAIYS STTEEADFMV RLLGNISLPN DVPNSSNVKF SSTYWPASES  60
DVNKAVVQED SSINSSDDTS VDADVCYSFS QGSSFSGEGS SILCPLSQIY FCNSNSIISQ  120
PIVTRNDSSV CADYAMMECK NKMDSCDHEI IRMNNILMEE GRDFLNQDVS SDCSMESGEN  180
DMPEAFSRGM ILQQGKDQHE INSLASEKSL EDESDNLLES SKKRPSTPLD VHKNKRMINA  240
KTNHQKLHPY DSKIAEGGHP MLCLQSSSSY LSEDDSNVFH ESNAGVLPIP ASCSDSKGAI  300
TAFNLNGKTR ASRGSATDHQ SLYARKRREK INERLRILQK LIPNGTKVDI STMLEEAVQY  360
VKFLQLQIKL LSSDDLWMYA PIAYNGKNLG LDMDATLKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	325	330	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	5e-54	bHLH family protein