PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027112628.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 300aa MW: 31297.6 Da PI: 6.5017

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027112628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H XP_027112628.1 124 YKCSVCNKAFSSYQALGGHKASH 146 9***********99999998887 PP
2	zf-C2H2	16	3.5e-05	182	204	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ksF++ L H r+H XP_027112628.1 182 HVCSICNKSFPTGQALGGHKRRH 204 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MALEALNTRA APPPPSLVYD EEFRNLSFEK YVKKKRSKRP GSASCSPPRP ENSSSEDDNP 60 SSLEERCKEE YLALCLIMLA RGGNDKNVAS SSSAANDKNV ASSSTGFKTE NQETEPSLPE 120 AQSYKCSVCN KAFSSYQALG GHKASHRKLS AAVSDDEKPS TSAAAPGNAP YVSVLNPSGR 180 AHVCSICNKS FPTGQALGGH KRRHYEGTIG GHTVGHGGVS ATATASGSGV TCSDGGGASP 240 SHAALGIDLN VPAPELEFEL GFGVDCGVES QHLADHEEVD SPMPTKKPRL SFSVDLGCAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	3e-41	C2H2 family protein