PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112130.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 273aa    MW: 30174 Da    PI: 10.2194
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112130.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind318.91.5e-97227325301
       GAGA_bind  25 glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepql 119
                     ++++  ++aerda+i+er+ alsek+aa+ erd a +qrd+a++er++al erdn+++al+++e +++ al  g+++ +g k  ++++   + + 
  XP_027112130.1   2 NTKINMLLAERDAAIEERDRALSEKRAALDERDSAIQQRDTAISERDHALRERDNAIAALQFQESTMNGAL--GCGTQHGMKRFNQHRS-PHANS 93 
                     567777889*****************************************************999876555..8899999999997776.78888 PP

       GAGA_bind 120 edsavelreeeklealpieeaaeeakekkkkkkrqrakk.pkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPv 212
                     ++sa ++re  ++ea+pi+   +ea ++++ k+++ +++ p ++k+ kk k +e+ +++v++++    skae++ +dl +ln++s+De+++P+Pv
  XP_027112130.1  94 AQSANKTREGPITEAFPITAISSEAARSHQAKRTKVNNViPAKSKSAKKAKVGEDLNRHVTTDG----SKAEWDAQDLsSLNQISFDETRMPIPV 184
                     9999999************999999988888866655432566666677777777777777776....89********89*************** PP

       GAGA_bind 213 CsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     C+CtG+ rqCYkWGnGGWqS+CCtt++SvyPLP+ +++r+aR++grKmS+++f++lL +Laa G+dls ++DLk++WAkHGtn+++ti+
  XP_027112130.1 185 CTCTGVARQCYKWGNGGWQSSCCTTSLSVYPLPQIPNKRHARMGGRKMSGSVFSRLLTRLAAGGHDLSIALDLKNYWAKHGTNRYITIK 273
                     ****************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MNTKINMLLA ERDAAIEERD RALSEKRAAL DERDSAIQQR DTAISERDHA LRERDNAIAA  60
LQFQESTMNG ALGCGTQHGM KRFNQHRSPH ANSAQSANKT REGPITEAFP ITAISSEAAR  120
SHQAKRTKVN NVIPAKSKSA KKAKVGEDLN RHVTTDGSKA EWDAQDLSSL NQISFDETRM  180
PIPVCTCTGV ARQCYKWGNG GWQSSCCTTS LSVYPLPQIP NKRHARMGGR KMSGSVFSRL  240
LTRLAAGGHD LSIALDLKNY WAKHGTNRYI TIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-100BBR-BPC family protein