PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027112127.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 312aa    MW: 34841.1 Da    PI: 10.1221
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027112127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind327.83.2e-10013121301
       GAGA_bind   1 mdddgsre..rnkg.yye...............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 
                     mdd g+re  r+++ yy+               +++++   +++++  ++aerda+i+er+ alsek+aa+ erd a +qrd+a++er++al er
  XP_027112127.1   1 MDDGGQREsrRQRTdYYKgahspwngiphyqikEQNAFF--MNTKINMLLAERDAAIEERDRALSEKRAALDERDSAIQQRDTAISERDHALRER 93 
                     99****999888889************777653224444..8889999999******************************************** PP

       GAGA_bind  78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakk.pkekkakkkkkks 171
                     dn+++al+++e +++ al  g+++ +g k  ++++   + + ++sa ++re  ++ea+pi+   +ea ++++ k+++ +++ p ++k+ kk k +
  XP_027112127.1  94 DNAIAALQFQESTMNGAL--GCGTQHGMKRFNQHRS-PHANSAQSANKTREGPITEAFPITAISSEAARSHQAKRTKVNNViPAKSKSAKKAKVG 185
                     *********999876555..8899999999997776.788889999999************9999999888888666554325666666777777 PP

       GAGA_bind 172 ekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265
                     e+ +++v++++    skae++ +dl +ln++s+De+++P+PvC+CtG+ rqCYkWGnGGWqS+CCtt++SvyPLP+ +++r+aR++grKmS+++f
  XP_027112127.1 186 EDLNRHVTTDG----SKAEWDAQDLsSLNQISFDETRMPIPVCTCTGVARQCYKWGNGGWQSSCCTTSLSVYPLPQIPNKRHARMGGRKMSGSVF 276
                     77777777776....89********89******************************************************************** PP

       GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     ++lL +Laa G+dls ++DLk++WAkHGtn+++ti+
  XP_027112127.1 277 SRLLTRLAAGGHDLSIALDLKNYWAKHGTNRYITIK 312
                     ***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MDDGGQRESR RQRTDYYKGA HSPWNGIPHY QIKEQNAFFM NTKINMLLAE RDAAIEERDR  60
ALSEKRAALD ERDSAIQQRD TAISERDHAL RERDNAIAAL QFQESTMNGA LGCGTQHGMK  120
RFNQHRSPHA NSAQSANKTR EGPITEAFPI TAISSEAARS HQAKRTKVNN VIPAKSKSAK  180
KAKVGEDLNR HVTTDGSKAE WDAQDLSSLN QISFDETRMP IPVCTCTGVA RQCYKWGNGG  240
WQSSCCTTSL SVYPLPQIPN KRHARMGGRK MSGSVFSRLL TRLAAGGHDL SIALDLKNYW  300
AKHGTNRYIT IK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-116BBR-BPC family protein