PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027110460.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 203aa MW: 22160.4 Da PI: 7.9845

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027110460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126	1.9e-39	8	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+a+l XP_027110460.1 8 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQAQL 102 7***********************99***************************************************************** PP DUF260 95 allkee 100 +++++ XP_027110460.1 103 MQARAQ 108 999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MANGAGSPCG ACKFLRRKCA ADCIFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHVPVP 60 DRCEAVVTIA YEAQARIRDP VYGCVAHIFA LQQQVAYLQA QLMQARAQLA QTMIDSSRSA 120 ENHWPNNMAA MGSFQTYPTY ANSISPQSSI CSLESIDPSS DGIGVQEMMR GLDDISFQAY 180 ARKRPSQTDL GELQALALRM MKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	2e-60	LBD family protein