PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027110419.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 259aa    MW: 29139.2 Da    PI: 8.6855
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027110419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-1280132155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +r  h  +Er+RR+++ + ++ Lr+llP       ++K   ++  ++Av+YIk Lq
  XP_027110419.1  80 KRILHRDIERQRRREMANLYASLRSLLPLdY---VKGKRAISDHMQEAVNYIKCLQ 132
                     6889*************************66...9*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MYPLQQGNEL ENQNPCIPCQ PDKILNDLVT LESTASLPPA TNITGKKHHH RRFLPAIQQE  60
NKKQDHEDTT TTNSNQHKLK RILHRDIERQ RRREMANLYA SLRSLLPLDY VKGKRAISDH  120
MQEAVNYIKC LQKNINQLGS RRDRLMIPPC NLSSTFSSGN RSTSADSRCL RDCGAIVRVS  180
QGGDGVEVLI SISSKEETFP ISRVLKMLLG EGLDVVSCVS TATNEIKVHK ILAEVTDDRK  240
SIDTLALQHQ LMNAINPPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18092KRILHRDIERQRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.16e-33bHLH family protein