PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027109723.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 273aa    MW: 31193.9 Da    PI: 5.9516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027109723.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.2e-12100150153
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 
                     +r+ah  +Er RR+++ + ++ Lr llP       ++K s ++ + +Av+YI +
  XP_027109723.1 100 KRAAHRDVERLRRQEMANLYASLRNLLPLeY---IKGKRSMSDQVHQAVNYITH 150
                     79***************************77...******************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MDDFTSSLIP LQQDDDDSQL FPYDLTVPTI HPYLDDTIHH QDLGNQAASS LAPHQQQHYD  60
QVTSIDDDDN NNHHPRGRQR KKPSSAIPAD NNDPDDSKQK RAAHRDVERL RRQEMANLYA  120
SLRNLLPLEY IKGKRSMSDQ VHQAVNYITH KEKNIRELKV KRDKLRNLMG GSSDLNVKSV  180
EETNSSSTTF TVKQCESGGI EILMKNDLAG NCFPLSRVLD MLLDEGLNVV NCVCTKVDEN  240
FLYTIQTEAS HMDVDIIFLQ QKLTEKVMTR KNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100112KRAAHRDVERLRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-39bHLH family protein