PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027109652.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 302aa    MW: 33204.3 Da    PI: 7.9604
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027109652.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.5e-20152201255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a+ +++g
  XP_027109652.1 152 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFETAEDAARAYDRAAIEFRG 201
                     59*******.**********94....36************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MQRSTKRLKQ EGIPLTSSHA TSILPPPLPP PPPPPPRMIT SEQEVSVMVA ALKNVIAGAS  60
TVTTTTPYAD ANTLHDFRLF PPSLFECATA SSSSSSSSAF FNANNLVVPA AAVQTCQLCG  120
YEGCLGCNYF SPSAAPVEDN NKKNGVKRKK KNYRGVRQRP WGKWAAEIRD PRKAARVWLG  180
TFETAEDAAR AYDRAAIEFR GPRAKLNFPF SDYTLDGHQS SSSPQQVPER DQHHHHHLPH  240
KQLQPEIKAK NEIVDTSGME LGTSNGMEFW EAIGEEEIQQ WMMMMDFQGH SSSSGSGNVH  300
SA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-28ERF family protein