PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027109532.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 167aa    MW: 18296.3 Da    PI: 4.3252
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027109532.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28e-05138163530
                     HHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                     h  +Er+RR+++ ++f  L   +P +
  XP_027109532.1 138 HILAERKRREQLSQGFVALSAFVPGL 163
                     8899*******************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    
MEDPFVDDQC DIMDYFDEDF TVALGEDLES NLSAVSAMEA PPISIEIPAP QQNSNSCNSA  60
ATLENMPNHH NQPIILTFGD PSTPEINPQP LNLEDDGVES EVLTSHGSFV NLEEAAQNAR  120
KKKKTGGRVR PASQIHDHIL AERKRREQLS QGFVALSAFV PGLKKVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147ERKRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.14e-12bHLH family protein