PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109518.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 160aa MW: 18047.3 Da PI: 5.8565

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109518.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	160.4	2.7e-50	3	98	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 eqdr+lPianv+r+m+++lP akisk+aket+qec++efisfvt+easdkc +e+rkt+ngdd++wal+tlGf+ y+e++ yl+kyre+e+++ XP_027109518.1 3 DEQDRLLPIANVGRVMRQILPPSAKISKEAKETIQECATEFISFVTAEASDKCYKENRKTVNGDDICWALSTLGFDTYAEAMLRYLHKYREFERQR 98 69*******************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence
MVDEQDRLLP IANVGRVMRQ ILPPSAKISK EAKETIQECA TEFISFVTAE ASDKCYKENR 60 KTVNGDDICW ALSTLGFDTY AEAMLRYLHK YREFERQRVN QSKASNLENE AHTPIRVSTD 120 STDSDGSNLQ PEKQSESPIA FEFRVLEKGQ SSKIKPAAKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	8e-60	NF-YB family protein