PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109347.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 338aa MW: 37029.7 Da PI: 4.8482

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.3e-13	115	166	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ + Lr+l+P + k+ + a+i +v+YI++Lq XP_027109347.1 115 QRMSHITVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 166 79*************************9...9******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MDGENLSELF EFDETNLAGP TSPDDIFSVL EALEGVSEFN EMTPLDEAAG GSNPKDRGDQ 60 ETGSTRLVSQ KSTSSSALQE SENELETSQK SKRRKLTVEP TATASSEEAN IDGLQRMSHI 120 TVERNRRKQM NEHLTVLRSL MPCFYVKRGD QASIIGGVVD YINELQQVLQ SLEAKKQRKV 180 YSEVLSPRLV SSPRSSPLSP RKPPLSPRLS LPISPRTPQP SSPYKPRLQQ HGLPSPCSSS 240 TSSTVDSVNE LVANSKSAIA EVEVKFSGPN VLLKTLSPRL PGQVVKIVSA IEDLSLEILQ 300 VEMSATDQTM INSFTIKIGI ECQLSAEELA QQIQQTFC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	127	RMSHITVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06120.1	2e-51	bHLH family protein