PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109047.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 271aa MW: 30900.2 Da PI: 7.441

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	4e-12	84	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r+ h +Er+RR+++ + + Lr llP ++K s ++ + +Av+YIk+++ XP_027109047.1 84 KRAIHRDIERKRRQEMATLCAALRNLLPLeY---IKGKRSISDHVLEAVNYIKHME 136 7999***********************77...******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MDDYTANLVP LYEDDSLLFP TIHPYLEPTI CHQDLEIQGA SSLAACQQNT EEINTAGKRQ 60 RKSSSAIRAD NHDSGVNHDD SKQKRAIHRD IERKRRQEMA TLCAALRNLL PLEYIKGKRS 120 ISDHVLEAVN YIKHMEKNIR ELEAKRNKLR YLMGELSNTD VKNVEETNSS SIKFTVKPCL 180 GGGIEILMEN YSANNWFPLS RILDVLLDEG LTVVTCICTK VNANFLYRIQ TEASCMTDVD 240 LICLQKKLTE KVMAWKNFKS ENNTRTGTRF A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	97	ERKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-38	bHLH family protein