PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027108618.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 250aa MW: 27842.8 Da PI: 5.503 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.9 | 3.1e-26 | 137 | 186 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++++++kyF+ pi++AAkeL+v+lTvLK++CR+++I+RWPhRkiksl XP_027108618.1 137 SALEVDEIQKYFDVPITKAAKELKVGLTVLKKRCRELNIRRWPHRKIKSL 186 67899*******************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence |
MNPPALSVVY QLENLLASDG SLYFEEQPPS GAWEQSYLAF PESLGNVQRA YVTDFEDICG 60 DFGWHSPPDV KEPFFEGDVN VVDAKPLNAA GEIRDQALLE NGETVFGEAS GGNAVCSRSS 120 EPLVSDDGLV SGRYKSSALE VDEIQKYFDV PITKAAKELK VGLTVLKKRC RELNIRRWPH 180 RKIKSLKSLI DSAKELGLTS EIEMLEEHKR MLKVLPEMEL TERTKKLRQA CFKANYKKRR 240 AMAAAAAAMA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-41 | Nin-like family protein |