PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108559.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 589aa MW: 63416.3 Da PI: 5.96

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.7e-13	390	435	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YIk+L XP_027108559.1 390 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVAYIKEL 435 799*********************6.....4**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
MDELIVSSPS SSSMVSSLPQ ESRPITTTAA SSSLQLNLQY ILQTQSDCWA YAIFWQSSND 60 QSGRVVLAWG DGYFQGTKVV DDAPQNNNGN TTSTTGSGSG SQSERKKVMK GIQALLGETS 120 ADGQNDDGSV DCDVTDAEWF YVMSLAQSFF ADDGAPGKAF SSGNLVWLTG GQQLQFYNCQ 180 RAREAQIHGI ETLVCIPTAG GVLELGSNAL IQDINWGLVQ QAKSLFGPAA DVGAGVADAA 240 AAATTRLLLT TKQQEEAPES VDDEMLEGAI SFADFGLVMG GIPLHNSSNQ QEEETDAATA 300 GAESKKDHHR YHHHHYQEAK KAKKRGEHDD NHGIGRRGTS QVSSFLESSD SDCVVVVETT 360 TRSHQVERKG GVGGKKRGRK AGTGRETPLN HVEAERQRRE KLNHRFYALR SVVPNVSRMD 420 KASLLSDAVA YIKELKGKVD ELESQLKRIE GNKKSVKIEV ADSNGNTTDN HSTTTASSSV 480 PVDQRITIPK SKKSCSGGGG MSSNVQVEVK MVGTDAMVRV QSDSSGYPTA RLMDAIRDLE 540 LRVHHASMSH VNDLMLQDVV IRVPPSGAWA SEEGLKAALL GRFLGTDDR

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

MDELIVSSPS SSSMVSSLPQ ESRPITTTAA SSSLQLNLQY ILQTQSDCWA YAIFWQSSND  60
QSGRVVLAWG DGYFQGTKVV DDAPQNNNGN TTSTTGSGSG SQSERKKVMK GIQALLGETS  120
ADGQNDDGSV DCDVTDAEWF YVMSLAQSFF ADDGAPGKAF SSGNLVWLTG GQQLQFYNCQ  180
RAREAQIHGI ETLVCIPTAG GVLELGSNAL IQDINWGLVQ QAKSLFGPAA DVGAGVADAA  240
AAATTRLLLT TKQQEEAPES VDDEMLEGAI SFADFGLVMG GIPLHNSSNQ QEEETDAATA  300
GAESKKDHHR YHHHHYQEAK KAKKRGEHDD NHGIGRRGTS QVSSFLESSD SDCVVVVETT  360
TRSHQVERKG GVGGKKRGRK AGTGRETPLN HVEAERQRRE KLNHRFYALR SVVPNVSRMD  420
KASLLSDAVA YIKELKGKVD ELESQLKRIE GNKKSVKIEV ADSNGNTTDN HSTTTASSSV  480
PVDQRITIPK SKKSCSGGGG MSSNVQVEVK MVGTDAMVRV QSDSSGYPTA RLMDAIRDLE  540
LRVHHASMSH VNDLMLQDVV IRVPPSGAWA SEEGLKAALL GRFLGTDDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	2e-47	bHLH family protein