PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108508.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ERF

Protein Properties

Length: 378aa MW: 42279.1 Da PI: 4.7705

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.5	9.3e-20	134	184	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp r +r++lg+++taeeAa +++a+ +++g XP_027108508.1 134 KKYRGVRQRP-WGKWAAEIRDP---A-RkARIWLGTYDTAEEAAMVYDRAAIQIRG 184 59******.******8...2.35*********************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MDTDKLSQPL RKTVHRKILD NTAINMPRVV RIQFTDCDAT DSSGDDDDDG RLLSPFFRPP 60 RIKKLLSEIV IEKKKYSCPR KATFVDEVKN AVKDDLMKTK TTPKKKKRPL SNFINPNCCT 120 GSNSTAGEAV GNVKKYRGVR QRPWGKWAAE IRDPARKARI WLGTYDTAEE AAMVYDRAAI 180 QIRGPDALTN FIRPPEPERP DYTTTEEELA EVHATSVSGY DSGKESENNN LCSPTSVLRF 240 KDKHQPPQQN DQFKESSSAT RRNPITAASA SASATKWAGD WRPVEPVGAE SEGISNSLDD 300 DDSLLLDQCL LNEFFNLKSP SPLIYNEIIG HDDGVLELEE GNFDDDMPLD FGFGDDFGTS 360 CGAWDVNDFL EDHQLLLV

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MDTDKLSQPL RKTVHRKILD NTAINMPRVV RIQFTDCDAT DSSGDDDDDG RLLSPFFRPP  60
RIKKLLSEIV IEKKKYSCPR KATFVDEVKN AVKDDLMKTK TTPKKKKRPL SNFINPNCCT  120
GSNSTAGEAV GNVKKYRGVR QRPWGKWAAE IRDPARKARI WLGTYDTAEE AAMVYDRAAI  180
QIRGPDALTN FIRPPEPERP DYTTTEEELA EVHATSVSGY DSGKESENNN LCSPTSVLRF  240
KDKHQPPQQN DQFKESSSAT RRNPITAASA SASATKWAGD WRPVEPVGAE SEGISNSLDD  300
DDSLLLDQCL LNEFFNLKSP SPLIYNEIIG HDDGVLELEE GNFDDDMPLD FGFGDDFGTS  360
CGAWDVNDFL EDHQLLLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	109	PKKKKRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	3e-36	ERF family protein