PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027107813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21061.1 Da PI: 8.1595 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117 | 1.2e-36 | 11 | 106 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC k+C++apyf eq +++fa+vhk+FGasn +k+l ++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq e + a++ XP_027107813.1 11 PCGACKFLRRKCLKGCIFAPYFDPEQgTAHFAAVHKVFGASNASKMLLRVPAHKRLDAVVTLCYEALARIRDPVYGCVGHLFTLQQQAELACAQA 105 7*********************666659**********************************************************988776655 PP DUF260 95 a 95 XP_027107813.1 106 R 106 4 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MSGTGHNGSG PCGACKFLRR KCLKGCIFAP YFDPEQGTAH FAAVHKVFGA SNASKMLLRV 60 PAHKRLDAVV TLCYEALARI RDPVYGCVGH LFTLQQQAEL ACAQARLSTL QRLPSMLPPP 120 AQGPSPGNFQ SCTANASSIH NLEPPLPSEQ TSMDMEGFSN PVNDRDLGGG DDLHAFAQGF 180 VSRYLPEVKF KPCTSP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 2e-57 | LBD family protein |