PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027107677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 520aa MW: 58121.6 Da PI: 7.0616 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.6e-18 | 16 | 71 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+e+Le+l+ +++yp+++ +ee Ak++gLte+qV+ WF+ rR k+k+ XP_027107677.1 16 KKRIVKTRAQVEALEKLYDEHKYPTEALKEEFAKSVGLTEKQVSGWFCHRRLKDKR 71 89****************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 520 aa Download sequence |
MGEHSEDDKV LPEMNKKRIV KTRAQVEALE KLYDEHKYPT EALKEEFAKS VGLTEKQVSG 60 WFCHRRLKDK RLANPEAYAN GRQDRSSGIL QDRGSGLRQD SCGSTKQGDD RNYDPREVES 120 RRLVGQEYSA ADLTYELGSH YTGNHGSADD TSSGSSSSLR NMSFPQDRDR FALANSRYQA 180 QSLPMDIKEV KPRTGPSGYL KVKGQVENAA ITAVKRQLGR HYWADGPPLG VEFDPLPPGA 240 FESSIQEPPN DSTKMTESYY AEEAVLPRSP ENSMVHKNSN LGSGSQYNPK ASSHDSDMER 300 TRFKMAHGPD RSENCFPPKY KQKSPLHNHG DFYAGRSSSM DIHEGSARKT RVYDSQDPDR 360 KAKYGDGGMS LDSFSGHRHS RLHNPRVDSD HADPWLQNYN DMNSNVAPAE HFVSKSSNLA 420 SKGVEYDDFT HKGLSKRLAK EAKSSGERLT LNGNFDPVQP KNGLTSAKRV RNELPQEHYS 480 KKTSWSEVPP WTNQASRSAA EMPTSFSEDD ETADTSSSVD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03250.1 | 1e-69 | HB-other family protein |