PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027106482.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | YABBY | ||||||||
Protein Properties | Length: 214aa MW: 23686.1 Da PI: 7.8538 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 237.9 | 2.1e-73 | 18 | 178 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvs 97 +eq+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++ a + hl++s+ + lleel+++ nl n+ + +++ XP_027106482.1 18 PPTEQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLGHSFFSPqnLLEELRNTPPNLLINQPNPNESL---- 108 5689***************************************999999888888889999987654578888888888777665544332.... PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ +e+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl XP_027106482.1 109 ---MPVRGVDELPKPPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 178 ...45567889***999******************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
MSSSSAFATP DHHHLAAPPT EQLCYVHCNF CDTVLAVSVP CTSLFKTVTV RCGHCTNLLS 60 VNMRGLLLPS ANQLHLGHSF FSPQNLLEEL RNTPPNLLIN QPNPNESLMP VRGVDELPKP 120 PVANRPPEKR QRVPSAYNRF IKDEIQRIKA GNPDISHREA FSAAAKNWAH FPHIHFGLMP 180 DQPVKKSNVC QQEGEDVLMK DGFLAPANVG VSPY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 7e-94 | YABBY family protein |