PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027106308.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 345aa MW: 39070.8 Da PI: 8.3462

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027106308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.2e-06	183	202	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ XP_027106308.1 183 FACNICNKTFNRYNNMQMHM 202 78*****************9 PP
2	zf-C2H2	16.1	3.2e-05	267	289	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +CgksF k + ++H +++ XP_027106308.1 267 FNCRKCGKSFAVKGDWRTHEKNC 289 78*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MSSPKMGIRT TNCHVQDMNM CFQAAPTFIE WLKPTHESSS SSSSSSSSTL STQQEFLDQF 60 TNPMSFLKLP LFYQQQEEEL AVHESIQCLP LLSQFTDTKK RQEESIFGIK GSDKVEKVTV 120 ALHIGLPDSG SASSDSETKP YNLKEKPVDN YQKSPSTDGC TFNNESRFWI PTPAQILVGP 180 MQFACNICNK TFNRYNNMQM HMWGHGSEFR KGPESLRGAQ XAAMLRLPCY CCAQGCKNNI 240 NHPRAKPLKD FRTLQTHYKR KHGAKPFNCR KCGKSFAVKG DWRTHEKNCG KLWYCTCGSD 300 FKHKRSLKDH IRSFGNGHSP HPSLEGFEDE KECITGGSED ENAQY

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MSSPKMGIRT TNCHVQDMNM CFQAAPTFIE WLKPTHESSS SSSSSSSSTL STQQEFLDQF  60
TNPMSFLKLP LFYQQQEEEL AVHESIQCLP LLSQFTDTKK RQEESIFGIK GSDKVEKVTV  120
ALHIGLPDSG SASSDSETKP YNLKEKPVDN YQKSPSTDGC TFNNESRFWI PTPAQILVGP  180
MQFACNICNK TFNRYNNMQM HMWGHGSEFR KGPESLRGAQ XAAMLRLPCY CCAQGCKNNI  240
NHPRAKPLKD FRTLQTHYKR KHGAKPFNCR KCGKSFAVKG DWRTHEKNCG KLWYCTCGSD  300
FKHKRSLKDH IRSFGNGHSP HPSLEGFEDE KECITGGSED ENAQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-124	C2H2 family protein