PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027106088.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 303aa MW: 31464.9 Da PI: 6.5877

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027106088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H XP_027106088.1 129 YKCSVCNKAFSSYQALGGHKASH 151 9***********99999998887 PP
2	zf-C2H2	15.9	3.6e-05	187	209	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ksF++ L H r+H XP_027106088.1 187 HVCSICNKSFPTGQALGGHKRRH 209 79*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MALEALNTRA APQPPPPPPP PSLVCDEEFR NLSFEKYVKK KRSKRPGSAS CSPPRPENSS 60 SEDDSPSSLE ERCKEEYLAL CLIMLARGGD GKNVASSSAA NDKNVASSST GFKTENQETE 120 PSLPVAQSYK CSVCNKAFSS YQALGGHKAS HRKLSAAVSD DEKPSTSAEA PGNAPYVSAL 180 NPSGRAHVCS ICNKSFPTGQ ALGGHKRRHY EGTIGGHAVG HGGVSATATA SGSGVTCSDG 240 GGASPSHAAL GIDLNVPAPE LEFELGVDCG VESQRLADHE EVDSPMPTKK PRLSFSVDLG 300 CAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	2e-36	C2H2 family protein