PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105330.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 726aa MW: 79521.2 Da PI: 4.6751

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105330.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.2e-07	233	252	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C+ffa+ G+C G++C+F H XP_027105330.1 233 VCDFFAK-GWCIKGNSCRFLH 252 7****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence
MAAAAAAAKD PSSAETNSEA LSDEDIEYEE IEEEIEVEEE IEVEEEEEEV EEEVEEEVEE 60 EVEEEVVGGG DIKGEVDDDI DKEFGEELTP SNQVNDQNGF ATPGISVANL LPDTHVDQGC 120 AGDYRISGSS VTTHNEEPHV DGKLFFMDHN NGASPCDKWG RSGDSTRLPV HELDAAISLI 180 DTESKKDNED PYFEKGTYDI SGKDSKGEAP RIRPRSSSPE SVLNDGNKRQ AVVCDFFAKG 240 WCIKGNSCRF LHIKGGAAIS SHDKEGTVDA AAKKSELPDK KASSVQLTPH GGESPNKRSE 300 TKELPLLKDD RLVLSSQDFG RPSSQDFGRQ MNREEYLGYG SSMAKGNSLH GTFSRSYART 360 LETYGSTIGT PHSTSLEEMT CTRSNFLATD HSFSSLHRSP LSFAYPSWNT DSLSTQKQLG 420 SGQGDYASRS ASVQRSSSPF SGSESENVSQ TNAVNDKQCS ARSKTKTLYD WEPSVPFRPS 480 FFMTRHLLSS ASLYDPIRDS VEQASSVVGH SKISQSGKEA SVLGAHVQAD ADSFPTGTLG 540 TECSSNKYSV LFSAKNFSSK DSTAEAKESV GTQSQNKKSF LKEERFLDNE CVRDVMEADQ 600 MPIDCGSKSV SSGRHRTESK EEMSRQMIEA DADLKVEESR ALKNFHASLV EVVKELLKPS 660 WHKGVLSKDA HKIIVKKAVE KVLSTLQPHQ VPSTSESVKQ YLSLSQTKLA KLVEGYVDKY 720 RKSSLG

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence

MAAAAAAAKD PSSAETNSEA LSDEDIEYEE IEEEIEVEEE IEVEEEEEEV EEEVEEEVEE  60
EVEEEVVGGG DIKGEVDDDI DKEFGEELTP SNQVNDQNGF ATPGISVANL LPDTHVDQGC  120
AGDYRISGSS VTTHNEEPHV DGKLFFMDHN NGASPCDKWG RSGDSTRLPV HELDAAISLI  180
DTESKKDNED PYFEKGTYDI SGKDSKGEAP RIRPRSSSPE SVLNDGNKRQ AVVCDFFAKG  240
WCIKGNSCRF LHIKGGAAIS SHDKEGTVDA AAKKSELPDK KASSVQLTPH GGESPNKRSE  300
TKELPLLKDD RLVLSSQDFG RPSSQDFGRQ MNREEYLGYG SSMAKGNSLH GTFSRSYART  360
LETYGSTIGT PHSTSLEEMT CTRSNFLATD HSFSSLHRSP LSFAYPSWNT DSLSTQKQLG  420
SGQGDYASRS ASVQRSSSPF SGSESENVSQ TNAVNDKQCS ARSKTKTLYD WEPSVPFRPS  480
FFMTRHLLSS ASLYDPIRDS VEQASSVVGH SKISQSGKEA SVLGAHVQAD ADSFPTGTLG  540
TECSSNKYSV LFSAKNFSSK DSTAEAKESV GTQSQNKKSF LKEERFLDNE CVRDVMEADQ  600
MPIDCGSKSV SSGRHRTESK EEMSRQMIEA DADLKVEESR ALKNFHASLV EVVKELLKPS  660
WHKGVLSKDA HKIIVKKAVE KVLSTLQPHQ VPSTSESVKQ YLSLSQTKLA KLVEGYVDKY  720
RKSSLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	7e-39	C3H family protein