PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027105200.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family YABBY
Protein Properties Length: 183aa    MW: 20440.1 Da    PI: 8.5005
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027105200.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY220.35.6e-6821552170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     +++ +se+vCyv+CnfCntilavsvP +s+f +vtvrCGhC++llsvn+    q+l++++           ++++ ++e+ ++      s+s+ +
  XP_027105200.1   2 SMDITSERVCYVHCNFCNTILAVSVPCSSMFAIVTVRCGHCANLLSVNVGALPQTLPTQDL----------QKQQINNEDATKES---GSSSKCN 83 
                     67789****************************************************9994..........22222222222222...2222222 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     + +   ++ +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl
  XP_027105200.1  84 KFTP-FDSAEHDQPRITP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 155
                     2222.3567788899999.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MSMDITSERV CYVHCNFCNT ILAVSVPCSS MFAIVTVRCG HCANLLSVNV GALPQTLPTQ  60
DLQKQQINNE DATKESGSSS KCNKFTPFDS AEHDQPRITP IRPPEKRQRV PSAYNRFIKE  120
EIQRIKASNP EISHREAFST AAKNWAHFPH IHFGLKVDGN KQANKLDHPD AGDQGAQKSR  180
GFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-80YABBY family protein