PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027105194.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family YABBY
Protein Properties Length: 186aa    MW: 20809.5 Da    PI: 8.6964
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027105194.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY229.86.7e-7121582170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     +++ +se+vCyv+CnfCntilavsvP +s+f +vtvrCGhC++llsvn+    q+l++++  ++  k+++           +  ++++ s+s+ +
  XP_027105194.1   2 SMDITSERVCYVHCNFCNTILAVSVPCSSMFAIVTVRCGHCANLLSVNVGALPQTLPTQDL-QKLQKQQIN---------NEDATKESGSSSKCN 86 
                     67789*****************************************************993.332222222.........222222233333333 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     + +   ++ +++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl
  XP_027105194.1  87 KFTP-FDSAEHDQPRITP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 158
                     3333.3567788899999.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MSMDITSERV CYVHCNFCNT ILAVSVPCSS MFAIVTVRCG HCANLLSVNV GALPQTLPTQ  60
DLQKLQKQQI NNEDATKESG SSSKCNKFTP FDSAEHDQPR ITPIRPPEKR QRVPSAYNRF  120
IKEEIQRIKA SNPEISHREA FSTAAKNWAH FPHIHFGLKV DGNKQANKLD HPDAGDQGAQ  180
KSRGFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-80YABBY family protein