PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105081.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 468aa MW: 50917.1 Da PI: 5.2627

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.2	1.9e-05	360	397	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A++YIk L XP_027105081.1 360 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 397 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MADEFQGEVC GGSWWNSSRS MFGSSPCSSG ILHDLGSFGW STDFLDSKAR SSDDQSGNSA 60 NSDGSIVIQD LQKPNQPESA SNNSNLSIDS TLQILGIGLS SPSTTDWDRT LMHGSSNGRS 120 DQSNYQPMLQ EDHNSSMNYR QERGLDSCPA DQIQKDWSST LKNNFSTIVE EDSSINSFKS 180 SGNQPLNSIT TTSQCTAATC AGVSTSFPIS SASYGYSSTL LQTLFDTEVP QPQQSLFGTR 240 PMNYPSTTSY QNEFSPSLPK FSPLPKLQNT NSLQLSTNPN FCNGSAAAFN DLRVNFFPSV 300 QSQFPSSTFN EKPSLPSITT KVSNDGIRGL GSVAKKSSSE PAFKRPRIET PSPLPTFKVR 360 KEKLGDRITA LQQLVSPFGK TDTASVLHEA IDYIKFLHDQ VNVLSTPYLK NGSPIQRQQA 420 SDKVKDQEGS KEDLKSRGLC LVPISSTFPV AAETTTDFWT PTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MADEFQGEVC GGSWWNSSRS MFGSSPCSSG ILHDLGSFGW STDFLDSKAR SSDDQSGNSA  60
NSDGSIVIQD LQKPNQPESA SNNSNLSIDS TLQILGIGLS SPSTTDWDRT LMHGSSNGRS  120
DQSNYQPMLQ EDHNSSMNYR QERGLDSCPA DQIQKDWSST LKNNFSTIVE EDSSINSFKS  180
SGNQPLNSIT TTSQCTAATC AGVSTSFPIS SASYGYSSTL LQTLFDTEVP QPQQSLFGTR  240
PMNYPSTTSY QNEFSPSLPK FSPLPKLQNT NSLQLSTNPN FCNGSAAAFN DLRVNFFPSV  300
QSQFPSSTFN EKPSLPSITT KVSNDGIRGL GSVAKKSSSE PAFKRPRIET PSPLPTFKVR  360
KEKLGDRITA LQQLVSPFGK TDTASVLHEA IDYIKFLHDQ VNVLSTPYLK NGSPIQRQQA  420
SDKVKDQEGS KEDLKSRGLC LVPISSTFPV AAETTTDFWT PTFGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	4e-55	bHLH family protein