PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027105078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 196aa MW: 22327.6 Da PI: 4.8895 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40 | 7e-13 | 28 | 73 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + e+Er+RR+++ +++ eLr+l+P+ + ++Ka+i + A++YI +Lq XP_027105078.1 28 NLEAERKRRRKLSDRLLELRSLVPNI-----TNMNKATIITDAIDYIEELQ 73 6689*********************6.....58*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MAGLGDSPYD DYCASECEDE HKEFKSKNLE AERKRRRKLS DRLLELRSLV PNITNMNKAT 60 IITDAIDYIE ELQNTVRDLS DQLCQMDITL KEDMESQNKY VTDPAKEMKN WGIETEVKVT 120 RLNGAKLWIQ VVFQKKIGGF TKLMEAISVI GYDPKDVSVT TVKGALCVTS CVEAIHDGCV 180 EVDQIKNFLL ETTRRI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 39 | ERKRRRKL |
2 | 33 | 37 | RKRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 2e-31 | bHLH family protein |