PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027104976.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 341aa    MW: 36899.4 Da    PI: 6.3984
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027104976.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17245278134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_027104976.1 245 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 278
                     99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MNPNFVDEID CGSFFDHIDD LIEFPPENEC GNGLVGSGDC TNFPSLWDEA LPDTDTLFTG  60
NTSNSASDLS AELSVPYEDI VQLEWLSTFV EDSFSGGGMT LSKDNSSVNK DNPCNQFQTS  120
SPVSVLESSS SSSSSSCSGG KAIPLSPNHR GPQRARSKRP RPATFNPRPA IQLISPPASF  180
SETPHLFLAP GVSSESENFA ESEFVRKFPK PAGGEHKKKK KIKLTVPLGP MEINQNSASQ  240
AVRKCMHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FVPSLHSNSH  300
KKVLEMRVKV VEENTTVGTA AKASAAGREL VPESKPSLEY I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158162KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.25e-41GATA family protein