PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027104654.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28870.4 Da PI: 8.8747 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv v+ +G ++W++ ++ g+ R++k+c++rw +yl XP_027104654.1 14 KGPWTPEEDQILVSFVQHYGHENWRALPKQAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.7 | 2.7e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e ++++++ +G++ W++Ia++++ gRt++++k++w+++l XP_027104654.1 67 RGNFSKEEEETIIKLHQIMGNR-WSAIANRLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence |
MVRVPCCEKM GLKKGPWTPE EDQILVSFVQ HYGHENWRAL PKQAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF SKEEEETIIK LHQIMGNRWS AIANRLPGRT DNEIKNYWNT HLKKRVHQDA 120 VGQKDLRQLQ TNLWRSNSQG TPESGEASNH PGSEGNGDVQ NFTGSIHENF SSLDYSISAP 180 GPARVLAETN LKQSAKDSSK TNKYLGPASD SRLQFLSTGE SNIEPGEDSI KEDMVFWYNL 240 LLIAGKSQEK FAQIV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 3e-73 | MYB family protein |