PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103389.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 680aa    MW: 77096.5 Da    PI: 5.1541
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.82.1e-1143056761374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a +  d+  a++lL+++++++sp+gdp++Rla++f++AL+ar+a+++  ly+al++++t+    +++l a++++ e++P+ ++s+
  XP_027103389.1 305 LRDLLTRCAQAAAGYDNWIANELLKQIRQHSSPYGDPTERLAHCFANALEARIAGTGAALYSALTAKRTP---AADVLRAYQAYMEICPFQRMSN 396
                     6899*************************************************************99999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       aN+ I + +++ +r+HiiDf+i +G+QWp+++q ++ Rp+gpp+lRiTg++ p++g   +e++eetg+rL+++A+++ vpfefn+ +akr+++
  XP_027103389.1 397 AFANKSIGRLTSKVTRIHIIDFGILYGFQWPCFIQGISLRPGGPPKLRITGIDLPQPGfrPAERIEETGRRLENYAKRFSVPFEFNA-IAKRWDT 490
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L v+++E l+Vn+ ++l +++de+v  +s+rd+v++l+++++P+++v+   +  ++++ Fl+rf eal+++s+lfd++ea+lpre+ +r+
  XP_027103389.1 491 ITTEDLVVDKDEILVVNCLYRLRNVPDETVVPSSPRDAVMNLIRKINPDIFVHGVLNGMYSAPFFLTRFKEALYHFSSLFDMFEATLPREDLNRS 585
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + Ere++gr+++nv+aceg+er+er et+++W+ r ++aGF+++pl++++  ++++ ++  +++ + v+e+s++++ gWk+r ++++ +W+
  XP_027103389.1 586 MFEREVIGRDVMNVIACEGTERVERPETYKQWQVRNQRAGFRQLPLNKEIIREVRAKVKSSYNRHFLVDEDSDWMLHGWKGRVIYALACWK 676
                     **************************************************************999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    
MDTLFRADGY SNFGNEFLQP DFDSQDSLSE GNLVNDCQFD HLLNNVSGPS TFSSLPDDIS  60
ATQCELEDCT VERDYFDGVF KYLQQMLMDE EDLVDKHCML QDCLAFQSAE KSFYEVLNEN  120
HPSSLGSSPS ALDNSAEIWP NEVNDPVVSH HTFQSNFQLT TPAESSDLSV HYLVDPCLSP  180
SQTLQPSTER NGTVVAAGEK SSNDRSKKKN TRRDPEGGDQ DKDERPSKQL ASHTDEIDNI  240
EDYDDALLCP ARNPNFYGES PARGGTECPE IEGRKKQQYV PPTTAKRGRP RASQKQDSIR  300
EVVDLRDLLT RCAQAAAGYD NWIANELLKQ IRQHSSPYGD PTERLAHCFA NALEARIAGT  360
GAALYSALTA KRTPAADVLR AYQAYMEICP FQRMSNAFAN KSIGRLTSKV TRIHIIDFGI  420
LYGFQWPCFI QGISLRPGGP PKLRITGIDL PQPGFRPAER IEETGRRLEN YAKRFSVPFE  480
FNAIAKRWDT ITTEDLVVDK DEILVVNCLY RLRNVPDETV VPSSPRDAVM NLIRKINPDI  540
FVHGVLNGMY SAPFFLTRFK EALYHFSSLF DMFEATLPRE DLNRSMFERE VIGRDVMNVI  600
ACEGTERVER PETYKQWQVR NQRAGFRQLP LNKEIIREVR AKVKSSYNRH FLVDEDSDWM  660
LHGWKGRVIY ALACWKPAGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-176GRAS family protein