PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027103301.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 175aa    MW: 19158.5 Da    PI: 4.7156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027103301.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.2e-05137162429
                     HHHHHHHHHHHHHHHHHHHHHCTSCC CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk 29 
                      h  +Er+RR+++ ++f  L  ++P 
  XP_027103301.1 137 DHILAERKRREQLSQGFVALSAIVPG 162
                     6999********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MEDPFVDDQC DIMDYFDEDF TAALGEDLES NLSAVSAMEA PPISIEIPAP QQNSNSCNSA  60
ATLENMPNHH NQPIILTFGN PSTPEINPQP LNLKDDGVVS EVLTSHGSFV NLEEAAQNAR  120
KKKKTGGRVR PASQIRDHIL AERKRREQLS QGFVALSAIV PGFKKVCSIS KNPIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147ERKRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.17e-12bHLH family protein