PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027101320.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 272aa    MW: 31052.8 Da    PI: 6.2857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027101320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-1299149153
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 
                     +r++h  +Er RR+++ + f+ Lr llP       ++K s ++ + +Av+YI +
  XP_027101320.1  99 KRTSHRDVERLRRQEMANLFASLRNLLPLeY---IKGKRSMSDQVHQAVNYITH 149
                     7****************************77...******************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MDDFTSSLIP LQQDDDSQLF PYDLTIPTIH PYLDDTIHHQ DLGNQAASSL APHQQQHYDQ  60
VTSIDDDDNN NHHPKGRQRK KPSSAIPADN NDPDDSKQKR TSHRDVERLR RQEMANLFAS  120
LRNLLPLEYI KGKRSMSDQV HQAVNYITHK EKNIRELKAK RDKLRNLMGG SSDLNVKSVE  180
ETNSSSTTFT VKQCESGGIE ILMKNDLAGN CFPLSRVLDM LLDEGLNAVN CVCTKVDEKF  240
LYTIQTEASH MDVDIIFLQQ KLTEKVMTRK NF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199111KRTSHRDVERLRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.14e-40bHLH family protein