PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027101297.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 338aa MW: 37040.7 Da PI: 4.9241 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.5 | 2.3e-13 | 115 | 166 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ + Lr+l+P + k+ + a+i +v+YI++Lq XP_027101297.1 115 QRMSHITVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 166 79***************************9...9********************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence |
MDGENLSELF EFDETNLAGP TSPDNIFSVL EALEGVSDFN EMTPLDEAAG GSNPKDRGDQ 60 ETGSTRLVSQ KSTSSSALQE SENELETSQK SKRRKLTVEP TATASSEEPN IDGLQRMSHI 120 TVERNRRKQM NEHLTVLRSL MPCFYVKRGD QASIIGGVVD YINELQQVLQ SLEAKKQRKV 180 YSEVLSPRLV SSPRSSPLSP RKPPLSPRLS LPISPRTPQP SSPYKPRLQQ HGLPSPCSSS 240 TSSTVDSVNE LVANSKSAIA EVEVKFSGPN VLLKTLSPRL PGQVVKIVSA IEDLSLEILQ 300 VEMSATDQTM INSFTIKIGI ECQLSAEELA QQIQQTFC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 116 | 127 | RMSHITVERNRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06120.1 | 2e-51 | bHLH family protein |