PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027098056.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 233aa    MW: 25842.5 Da    PI: 8.5013
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027098056.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33e-1969123256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq + Lee F++n++++ +++e LA++l+L+ rqV vWFqNrRa+ k
  XP_027098056.1  69 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEVLAMQLRLKPRQVEVWFQNRRARSK 123
                     78889************************************************98 PP
2HD-ZIP_I/II117.29.3e-3869157189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq++lLEesF+++++L+p++K+ la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL+keveeLr+
  XP_027098056.1  69 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEVLAMQLRLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQKEVEELRA 157
                     69*************************************************************************************94 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MAILPNTSTC LELTMSIPGL PSSLSIPSSG EGGGVSMKDL DINQIPSGGE EECMEDEDES  60
PNGFGGHPRK KLRLTKEQSR LLEESFRQNH TLNPKQKEVL AMQLRLKPRQ VEVWFQNRRA  120
RSKLKQTEME CEYLKRWFGS LTEQNRRLQK EVEELRAMKV GPPTVLSPHN CEPLPASTLT  180
MCPRCERVTA TIAVQQDRAG PTTTTATGTT TSANPTLSAK VGFVRPRHPS AAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARSKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-68HD-ZIP family protein