PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027097037.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 266aa    MW: 28844.1 Da    PI: 7.0475
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027097037.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.7e-11165212455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  XP_027097037.1 165 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 212
                     8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MDPQASYNLG CDTAAYNLAE IWPFPMNNGP GPGASAATSF HNTNDFVATM SMNMNVNSGV  60
NRDRDPMVME QAPNPTPNSS GGGGVRRRRD DDEAVKGVSN SSNGNAMKAC DSKKLKTAGA  120
HENREAEAEG EANSGKAAEP SPKPAEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER  180
MKILQDLVPG CNKVIGKALV LDEIINYIQS LQRQVEFLSM KLEAVNSRLS PGIEGFPSKD  240
AVREYARGTS PDWLHMQIGG GFERSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
186116RRRRDDDEAVKGVSNSSNGNAMKACDSKKLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-69bHLH family protein