PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027096439.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 448aa MW: 49343.2 Da PI: 9.2175

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027096439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.4	1.3e-40	173	250	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhr+hkvC+ hsk+p+v+v+gle+rfCqqCsrfh+l+efDe+krsCrrrL++hn+rrrk+++ XP_027096439.1 173 RCQVEGCNLDLSSAKDYHRKHKVCDNHSKCPKVVVAGLERRFCQQCSRFHSLTEFDEKKRSCRRRLSDHNARRRKPRQ 250 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MEWNTKSDWD NFISFNSKTS DSLKKLQLTD LVIDDEGEID GGSFDLSGIG GTSGGSGSDL 60 GHGSSGKSSK SVSRDSSPKE GMKTSGLKLQ GSPGAIITEI VPPRADLSRT PSSLETSVVS 120 VEPLIGLKLG KRTYFENSAG SSTKSPGFSV APVSSISTAK KTKSSCQNAT IPRCQVEGCN 180 LDLSSAKDYH RKHKVCDNHS KCPKVVVAGL ERRFCQQCSR FHSLTEFDEK KRSCRRRLSD 240 HNARRRKPRQ ETIQFNRTKL TSSYHDGRKQ MNFSLNNGES IGNPTWENVC SSKFTLTQHF 300 PLKREKVGQP PLPRIELPYA MTMHNKLSNE LLTSKASAAD VFKQGFKESV SSSESAAPEF 360 PRALSLLSTN SWGSSEPEPI SFDHPLRVYP TTMPLSVIPQ ALPSEYWQIE TQSSSHTFTG 420 SSNIGGHFQE IQLFKPPYQN DIFSNTWS

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MEWNTKSDWD NFISFNSKTS DSLKKLQLTD LVIDDEGEID GGSFDLSGIG GTSGGSGSDL  60
GHGSSGKSSK SVSRDSSPKE GMKTSGLKLQ GSPGAIITEI VPPRADLSRT PSSLETSVVS  120
VEPLIGLKLG KRTYFENSAG SSTKSPGFSV APVSSISTAK KTKSSCQNAT IPRCQVEGCN  180
LDLSSAKDYH RKHKVCDNHS KCPKVVVAGL ERRFCQQCSR FHSLTEFDEK KRSCRRRLSD  240
HNARRRKPRQ ETIQFNRTKL TSSYHDGRKQ MNFSLNNGES IGNPTWENVC SSKFTLTQHF  300
PLKREKVGQP PLPRIELPYA MTMHNKLSNE LLTSKASAAD VFKQGFKESV SSSESAAPEF  360
PRALSLLSTN SWGSSEPEPI SFDHPLRVYP TTMPLSVIPQ ALPSEYWQIE TQSSSHTFTG  420
SSNIGGHFQE IQLFKPPYQN DIFSNTWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	230	247	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	7e-55	SBP family protein