PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027096434.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | SBP | ||||||||
Protein Properties | Length: 448aa MW: 49343.2 Da PI: 9.2175 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.4 | 1.3e-40 | 173 | 250 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhr+hkvC+ hsk+p+v+v+gle+rfCqqCsrfh+l+efDe+krsCrrrL++hn+rrrk+++ XP_027096434.1 173 RCQVEGCNLDLSSAKDYHRKHKVCDNHSKCPKVVVAGLERRFCQQCSRFHSLTEFDEKKRSCRRRLSDHNARRRKPRQ 250 6**************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence |
MEWNTKSDWD NFISFNSKTS DSLKKLQLTD LVIDDEGEID GGSFDLSGIG GTSGGSGSDL 60 GHGSSGKSSK SVSRDSSPKE GMKTSGLKLQ GSPGAIITEI VPPRADLSRT PSSLETSVVS 120 VEPLIGLKLG KRTYFENSAG SSTKSPGFSV APVSSISTAK KTKSSCQNAT IPRCQVEGCN 180 LDLSSAKDYH RKHKVCDNHS KCPKVVVAGL ERRFCQQCSR FHSLTEFDEK KRSCRRRLSD 240 HNARRRKPRQ ETIQFNRTKL TSSYHDGRKQ MNFSLNNGES IGNPTWENVC SSKFTLTQHF 300 PLKREKVGQP PLPRIELPYA MTMHNKLSNE LLTSKASAAD VFKQGFKESV SSSESAAPEF 360 PRALSLLSTN SWGSSEPEPI SFDHPLRVYP TTMPLSVIPQ ALPSEYWQIE TQSSSHTFTG 420 SSNIGGHFQE IQLFKPPYQN DIFSNTWS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 247 | KKRSCRRRLSDHNARRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.1 | 7e-55 | SBP family protein |