PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027095904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 202aa MW: 22584.4 Da PI: 10.3026 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.6 | 3.4e-06 | 37 | 82 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 E+ RR + ++ +++L +llP+ a +++Kl+ + +e+ Y+k+L XP_027095904.1 37 VKEKLRRLHFKNLYSRLASLLPPlA---SQEKLTLPALVEQSFVYLKDL 82 57*********************55...******************998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence |
MQAPVTSNPN KKKKRHCTVK GLKMQPEGVS CKIGRRVKEK LRRLHFKNLY SRLASLLPPL 60 ASQEKLTLPA LVEQSFVYLK DLKKRIDELN AKKEELKEDL VLPAIEMSEK GPILEVNLVT 120 SLKKGFTLHE VISILEEEGA QVLSANYSTS KNRIFYTISS QAYSSRIGIE TSRVYQRLKT 180 LSAAGFAPPA LGGTLCPLQF EG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 11 | 40 | KKKKRHCTVKGLKMQPEGVSCKIGRRVKEK |
2 | 12 | 41 | KKKKRHCTVKGLKMQPEGVSCKIGRRVKEK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10586.1 | 3e-26 | bHLH family protein |