PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G10586.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 174aa MW: 20083.4 Da PI: 10.2851 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.7 | 3.1e-06 | 16 | 63 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ n rE+ RR r+++ f+ L +++ + ++l + +Av Y+ +L AT1G10586.1 16 REQRNLREKERRMRMKHLFSILSSHVSPT-----RRLPVPQLIDQAVSYMIQL 63 7889**********************997.....7899999999999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.37E-11 | 13 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.198 | 14 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-5 | 16 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0076 | 20 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MERAREIGEG SASSLREQRN LREKERRMRM KHLFSILSSH VSPTRRLPVP QLIDQAVSYM 60 IQLKEKVNYL NEMKRRMLGG EVKNRSEGSS LLPKLSIRSL DSIIEMNLVM DLNMKGVMLH 120 KLVSVFEEEG AQVMSANLQN LNDRTFYTII AQAIICRIGI DPSRIEERLR DIIS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 25 | LREKER |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 263210_at | 8e-85 | ||||
Expression Atlas | AT1G10586 | - | ||||
AtGenExpress | AT1G10586 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G10586.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G10586 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007067 | 1e-179 | AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence. | |||
GenBank | CP002684 | 1e-179 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001117258.1 | 1e-123 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9XIJ1 | 1e-124 | BH168_ARATH; Transcription factor bHLH168 | ||||
TrEMBL | D7KLF8 | 1e-110 | D7KLF8_ARALL; T10O24.23 | ||||
STRING | AT1G10586.1 | 1e-122 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2382 | 21 | 67 | Representative plant | OGRP1345 | 11 | 47 |
Link Out ? help Back to Top | |
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Phytozome | AT1G10586.1 |
Entrez Gene | 6240488 |
iHOP | AT1G10586 |
wikigenes | AT1G10586 |