PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027095860.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 260aa    MW: 27224 Da    PI: 9.682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027095860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.2e-10162206554
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  XP_027095860.1 162 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 206
                     99***********************55......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MANNPTDGPS DDFLEQILGF PAYAGAAAPT DPNLAPGNDA HALPPPMMLQ LSSGDASSHL  60
ASVGLGVGVG LGVGTGGTFH GGNFPLGLSL EQGKAGGFVK MEEASGSGKR FRDDVVDGRP  120
AASSVRPGFH GQPLPTTVPV VPHPPAIRPR VRARRGQATD PHSIAERLRR ERIAERIRAL  180
QELVPSVNKT DRAAMLDEIV DYVKFLRLQV KVLSMSRLGG AGAVAPLVTD IPISSVERAA  240
KVEDPSRPGT SGQMMVLNVR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.22e-61bHLH family protein