PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027094953.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 372aa    MW: 41443.7 Da    PI: 4.5188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027094953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-102983381055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     rrRR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  XP_027094953.1 298 RRRRERINERLRILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 338
                     9******************97.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    
MEPMAAFFDE EWESLSRMFS TEDAEFMIQQ HGHESLSNDS DSSLFFQTAA NFWPVGDANI  60
ENVAGVGESF LCCDNTIDYS NFLNVSQDSS SSNASDTSIV FPNLSYEFHQ ASDINVFQVT  120
NGTPESMDFN AMDEKNDNSS VPVFLDGLVE DIISPREVMG SEKMNNAETQ PASNGNSANE  180
LLLKRKFKKS KLQTEAEPVE NSKKKSRVPR NVQKTKRIVQ PKSTKNQKAQ QINKDEEEAN  240
GAQNGQSSCS YSSEDDSNAS QESNGGEASD NKGPALNLNG KTRASRGSAT DPQSLYARRR  300
RERINERLRI LQNLIPNGTK VDISTMLEEA VHYVKFLQLQ IKLLSSDDMW MYAPIVYNGL  360
DIGLYGRTFP TL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.13e-45bHLH family protein